PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG166500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 291aa    MW: 31732.1 Da    PI: 6.5043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.12.5e-12199273190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ evGF +++  ++ +       +++++C+++g++++ + k         +++ +C a++++++++d  w+v+  + eHnH+la
  Pavir.1KG166500.1.p 199 EFYNIYSWEVGFGTKRGDKYGN------SMQELQCQCQGSDNRVQYK---------TKKKKCPAMVRLHRTQDFGWYVSVHRGEHNHALA 273
                          6*****************9998......5788*******99887766.........88999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-7199273IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPERSDQSSS GRSQIHQEGS HSGMSFQDMV LHANNGVLLP PVMEVLPEGG AVNNTSNDLG  60
NWNTQVVDDT AGQSASSSDS EMNVCSKTQE IHLVAVSDGN GCNSEMGADT FSGSEKQVVG  120
VGSGFADKGS GDDPKLVGDT ESQPWPKCKR LPGGAPTERP ARTMGAIERA LRNSSTRKTK  180
YIFEPTLGMT FDCVAEAVEF YNIYSWEVGF GTKRGDKYGN SMQELQCQCQ GSDNRVQYKT  240
KKKKCPAMVR LHRTQDFGWY VSVHRGEHNH ALAESYSEKL CWNSHGKIHQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-07FAR1-related sequence 12