PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG175300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 184aa    MW: 19797.4 Da    PI: 8.519
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG175300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.8e-115598548
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
                         kr +r   NR +A+rsR RK+++i eLe+ v +L+ e + L  +
  Pavir.1KG175300.1.p 55 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQMEVSVLSPR 98
                         899*******************************9997776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1251115IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.49653109IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-1155109No hitNo description
PfamPF001702.5E-955102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-1355109No hitNo description
CDDcd147031.94E-2056106No hitNo description
PROSITE patternPS0003605873IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSMFSDVDAP AVSDGAGGER AGDAQLMDMG DAEDEMAASS PAGARAAADG VADPKRVKRI  60
LANRQSAQRS RVRKLQYISE LERSVTSLQM EVSVLSPRVA FLDHQRSLLT VGNSHLKQRI  120
AALAQDKIFK DAHQEALKKE IERLRQLFHQ QQIKATTGGA DIATAASMQA RQELLACEGA  180
AIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.210480.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG175300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962471e-147FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828193.11e-124basic leucine zipper 19-like
SwissprotQ6K3R92e-92BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLA0A2T7F4781e-124A0A2T7F478_9POAL; Uncharacterized protein
STRINGPavir.Ab01112.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.14e-57bZIP family protein