PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG176900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 514aa MW: 60588.3 Da PI: 6.9618

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG176900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.5e-24	26	118	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fYn+YA GFsvrks+ + + +++e t r++vCs + +ree+ k + k+rr+r tr+gC akl++ +++ +++w+v+++ eHnH+ Pavir.1KG176900.1.p 26 QFYNAYALGKGFSVRKSYVEWNCDHTELTLRRYVCSHQSYREEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnNEQWYVKNFIDEHNHP 115 6**************************************9997663679999*************999************** PP FAR1 89 lap 91 lap Pavir.1KG176900.1.p 116 LAP 118 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-22	26	118	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-31	225	313	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.506	480	513	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MADLENLMEY SGIVSKMFAD EDEGYQFYNA YALGKGFSVR KSYVEWNCDH TELTLRRYVC 60 SHQSYREEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNN EQWYVKNFID EHNHPLAPAD 120 LGCLLHSHRS ISDAQKAEIV ELGGAGIRKH QIFEIMEMQY GGYDEVGYTS RDLYNFCHLY 180 KQEIIAAGDA QTIISHLMER QNRDSDFFFK YMTDGEGHLQ RLFYTYKTNR YNMPLVPFVG 240 VNHHYRTVIF GCGIISHENI ESYVWLLKTF TEANVKKHPI FVIIDGDLAI QRAISVVWPK 300 SPHRLCRWHI EQNLMHNVHD ETVKTEFRIF MYDLCSIEEI ERNWQAFFGK YDVTEDSWLY 360 QMYEVRATWC AAYHAGNRYL GLRSNQRSES MNFRLQMKLD GKMTLLEMVQ HYERCLTKPF 420 TDPEVSILEV NMKKRFTTNI FKTKVQFSVE AAKKCSLVEI LDGDDTTEYI VGRSDRDMMY 480 YVKCELTEEA NLKEIFCSCR KLQSLGTPCL HIFF

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MADLENLMEY SGIVSKMFAD EDEGYQFYNA YALGKGFSVR KSYVEWNCDH TELTLRRYVC  60
SHQSYREEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNN EQWYVKNFID EHNHPLAPAD  120
LGCLLHSHRS ISDAQKAEIV ELGGAGIRKH QIFEIMEMQY GGYDEVGYTS RDLYNFCHLY  180
KQEIIAAGDA QTIISHLMER QNRDSDFFFK YMTDGEGHLQ RLFYTYKTNR YNMPLVPFVG  240
VNHHYRTVIF GCGIISHENI ESYVWLLKTF TEANVKKHPI FVIIDGDLAI QRAISVVWPK  300
SPHRLCRWHI EQNLMHNVHD ETVKTEFRIF MYDLCSIEEI ERNWQAFFGK YDVTEDSWLY  360
QMYEVRATWC AAYHAGNRYL GLRSNQRSES MNFRLQMKLD GKMTLLEMVQ HYERCLTKPF  420
TDPEVSILEV NMKKRFTTNI FKTKVQFSVE AAKKCSLVEI LDGDDTTEYI VGRSDRDMMY  480
YVKCELTEEA NLKEIFCSCR KLQSLGTPCL HIFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG176900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441960.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2DKR4	0.0	A0A2K2DKR4_BRADI; Uncharacterized protein
TrEMBL	I1HMH8	0.0	I1HMH8_BRADI; Uncharacterized protein
STRING	Pavir.Ab00925.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-65	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG176900.1.p