PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG185200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 253aa    MW: 26527.8 Da    PI: 5.3605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG185200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-1854101152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Pavir.1KG185200.1.p  54 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 101
                          57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1254101IPR001471AP2/ERF domain
CDDcd000185.97E-1954113No hitNo description
PROSITE profilePS5103223.03755112IPR001471AP2/ERF domain
SMARTSM003803.7E-3555118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3155114IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2155112IPR016177DNA-binding domain
PRINTSPR003673.5E-105667IPR001471AP2/ERF domain
PRINTSPR003673.5E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRARNLAELA IAIELRQSSG ASSSPPQSPA EVEPRRSRRG GDKRARDAGG GNHPSYRGVR  60
MRAWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDAAAL VVKGPAAVLN FPEMAAALPR  120
PASAAHRDVQ AAAARAAAME PPAVPGASAA AAVAALPTSA PAPPVAGQQE DYELEAIVEL  180
PPLDEDAAEL VTIGATPFSF HDAAEVSWCV PESEWIDGGA GYMAAAHDEL FGLWPDGDHG  240
WGQSVGALLW NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1850112972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG185200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269404e-97KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.11e-113ethylene-responsive transcription factor ERF038
TrEMBLK3YVC61e-112K3YVC6_SETIT; Uncharacterized protein
STRINGPavir.Aa02576.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-27ERF family protein