PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG195600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 105aa MW: 12144.8 Da PI: 9.1725

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG195600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.9e-13	12	98	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtkleleHnH 87 +++YA+++GF ++ + k + r+ Cs++g+ k +++ r++ +++tgCk ++k+k + +gk +++++ +eHnH Pavir.1KG195600.1.p 12 LFRKYAEKAGFPIKWDGAKGT-------VRDISCSMSGHWPYFKPG-QQRVRNKFSKKTGCKVHMKLKDVEtdgeeySGKVMIEQVCTEHNH 95 699********99875554.......7899****999888.999*************986554444578899******** PP FAR1 88 ela 90 +la Pavir.1KG195600.1.p 96 PLA 98 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-7	12	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MFFDSEEEAY ELFRKYAEKA GFPIKWDGAK GTVRDISCSM SGHWPYFKPG QQRVRNKFSK 60 KTGCKVHMKL KDVETDGEEY SGKVMIEQVC TEHNHPLAKK HRGW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG195600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304148.1	4e-38	uncharacterized protein LOC8085124 isoform X1
Refseq	XP_021304149.1	4e-38	uncharacterized protein LOC8085124 isoform X1
Refseq	XP_021304150.1	5e-38	uncharacterized protein LOC8085124 isoform X2
TrEMBL	A0A1Z5R3I0	1e-36	A0A1Z5R3I0_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25347	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	3e-06	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG195600.1.p