PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG198800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 361aa    MW: 39750.2 Da    PI: 8.1708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG198800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-1566110348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rW++eE   l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
  Pavir.1KG198800.2.p  66 RWSQEENGNLIQMVNLHSSKSWSTVARGIP-GRSPNQCRDRWMFYL 110
                          9*****************************.***********9875 PP
2Myb_DNA-binding51.81.8e-16117157244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
  Pavir.1KG198800.2.p 117 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 157
                          79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.91459110IPR017930Myb domain
SMARTSM007172.2E-1163112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1866115IPR009057Homeodomain-like
CDDcd001677.59E-1266110No hitNo description
PfamPF139215.5E-1567127No hitNo description
SuperFamilySSF466893.67E-2790167IPR009057Homeodomain-like
PROSITE profilePS5129422.14111165IPR017930Myb domain
SMARTSM007172.1E-13115163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-21116166IPR009057Homeodomain-like
CDDcd001671.61E-12118157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRRGGGGAPS RRGSGGSTCC SGEIDWIADE RGELQRPYKH LKDEEHKGTA DCLLHKKGNS  60
LKRSRRWSQE ENGNLIQMVN LHSSKSWSTV ARGIPGRSPN QCRDRWMFYL DPSVNNQPWS  120
EHEDIKLIQA HKIHGSKWSK LAKLFPGRTG KAVKNHWPSL LRKQMKSDLV SGLPEQFPYI  180
PKDPSVTKSK GSSTFQSDQD SSINIHVSSD SAVRPKPEQG IAENGRNEST LKGTSYDSVH  240
GNGSVSHSVN VSEKVDGQIF RSNSLSCMDQ KASSATGSFP GSLPKEESTN FLEVTPNRGL  300
CTTYDHLSND CFDGICSSAD RESQELHLSS IAYLLDMPYC KSLMIVPPDS PDHGNYADGM  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-266716710110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG198800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF60.0A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-33myb domain protein 3r-4