PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG198800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 449aa    MW: 50119.1 Da    PI: 8.1792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG198800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161151244
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                         ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
  Pavir.1KG198800.5.p 11 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 51
                         79*******************.*********.*********** PP
2Myb_DNA-binding47.34.8e-15154198348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rW++eE + l++ v+++ +++W+t+ar ++ gR++ qc++rw  yl
  Pavir.1KG198800.5.p 154 RWSQEENDNLIQMVNLHSSKSWSTVARGIP-GRSPIQCRDRWMFYL 198
                          8*****************************.***********9875 PP
3Myb_DNA-binding46.49e-15205245244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a++ +G++ W + a+ ++ gRt+k +k++w
  Pavir.1KG198800.5.p 205 QPWSEHEDIKLIQAHEIHGSK-WCKLAKLFP-GRTGKAVKNHW 245
                          79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.45E-18361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-20360IPR009057Homeodomain-like
PROSITE profilePS5129421.88559IPR017930Myb domain
SMARTSM007175.2E-13957IPR001005SANT/Myb domain
PfamPF002495.1E-141151IPR001005SANT/Myb domain
CDDcd001674.36E-121251No hitNo description
PROSITE profilePS5129411.77147198IPR017930Myb domain
SMARTSM007176.0E-12151200IPR001005SANT/Myb domain
SuperFamilySSF466896.97E-27151245IPR009057Homeodomain-like
CDDcd001676.85E-12154198No hitNo description
Gene3DG3DSA:1.10.10.604.8E-17154202IPR009057Homeodomain-like
PfamPF139214.5E-14155215No hitNo description
PROSITE profilePS5129420.023199253IPR017930Myb domain
SMARTSM007173.7E-13203251IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-20203254IPR009057Homeodomain-like
CDDcd001676.33E-12206245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MFYLDPSVNN QPWSEHEDIK LIQAHKIHGS KWSKLAKLFP GRTGKAVKNH WPSLMRKQMK  60
SDLISGLPEQ FLYMPKDQSV TKNKGCSTIQ SDQDSSTNIH VSSDSAVRPK SEQGLADERG  120
ELQRPSKHLK DEEYKRTADC LPHKKGNSLK RSHRWSQEEN DNLIQMVNLH SSKSWSTVAR  180
GIPGRSPIQC RDRWMFYLDP AVNNQPWSEH EDIKLIQAHE IHGSKWCKLA KLFPGRTGKA  240
VKNHWPSLLR KQMKSDLVSG LPEQFPYIPK DPSVTKSKGS STFQSDQDSS INIHVSSDSA  300
VRPKPEQGIA ENGRNESTLK GTSYDSVHGN GSVSHSVNVS EKVDGQIFRS NSLSCMDQKA  360
SSATGSFPGS LPKEESTNFL EVTPNRGLCT TYDHLSNDCF DGICSSADRE SQELHLSSIA  420
YLLDMPYCKS LMIVPPDSPD HGNYADGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24325510110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG198800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2T7F4E50.0A0A2T7F4E5_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-33myb domain protein 3r-4