PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG213600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 168aa    MW: 19049.1 Da    PI: 9.2396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG213600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1868151181
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                          f k+ltpsdv+k++rl +p++fae++         +g    +  lt+ed ++g  W ++++ + +s +yvltkGW  F k+++L+    +
  Pavir.1KG213600.1.p  68 FSKILTPSDVGKLNRLLIPRQFAEKYfpkiskiksDG---IDPILTFEDcSTGLMWHFRFSLWHSSTTYVLTKGWLAFIKEKNLN----L 150
                          88**************************998765522...33469****999*******************************97....5 PP

                          E CS
                   B3  81 v 81 
                          v
  Pavir.1KG213600.1.p 151 V 151
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-2657149IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-1866166No hitNo description
SuperFamilySSF1019362.09E-2067163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.71468167IPR003340B3 DNA binding domain
SMARTSM010191.8E-668167IPR003340B3 DNA binding domain
PfamPF023622.4E-1568149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRQQMEKAPL CENSFHMVNA FSSYLFVSPW ASMSAPVFPL GLSNFHGGLG VCGASKRGRE  60
EIEMEFLFSK ILTPSDVGKL NRLLIPRQFA EKYFPKISKI KSDGIDPILT FEDCSTGLMW  120
HFRFSLWHSS TTYVLTKGWL AFIKEKNLNL VFSMHSSNNI NVHLHVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-266516611112DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG213600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022769766.15e-28B3 domain-containing transcription factor NGA1-like
SwissprotQ7F9W23e-28Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A3L6QL961e-89A0A3L6QL96_PANMI; Uncharacterized protein
STRINGPavir.Ha01451.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-28B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]