PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG214200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 125aa MW: 13419.3 Da PI: 8.51

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG214200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.9	1.1e-10	38	79	43	86
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++sW v++ ++ + l+ GW++Fv n+L+ gD +vF+l+ Pavir.1KG214200.1.p 38 NQSWAVTY--CGELKCKKLGPGWRDFVVTNRLRIGDACVFELIT 79 589***..55554456*********************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.25	1	103	IPR003340	B3 DNA binding domain
CDD	cd10017	3.47E-10	9	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.1E-11	13	101	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-10	17	84	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-7	37	79	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MQFTQLNAVA YSCAQEIPRH LHSHLPGSRV PAVLLFGNQS WAVTYCGELK CKKLGPGWRD 60 FVVTNRLRIG DACVFELITP AAGGTGSEGD GKVVFRVQVL RGDLPDEITS RGATSGSHCH 120 RGQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG214200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	4e-44	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	6e-23	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A3L6RQW6	3e-58	A0A3L6RQW6_PANMI; B3 domain-containing protein
STRING	Pavir.Ab01689.1.p	3e-76	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Link Out ? help Back to Top
Phytozome	Pavir.1KG214200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]