PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG214800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 207aa    MW: 23250.7 Da    PI: 11.0026
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG214800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.52.5e-1912137290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerr 53 
                           Yn+YA +vGF +r+ +s+ks+ ++++++++f C+   k++e + +                                      t+ +r+
  Pavir.1KG214800.1.p  12 VYNDYAFKVGFGTRVGSSRKSNVTKQVIRKEFECTHARKPAECEGSgsaatndlatantskkrrpladpatansskkkrpssmlTTASRK 101
                          7*****************************************99999*************************************99**** PP

                 FAR1  54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           r+ ++ +Cka++ + ++ +gkw v  +++eH+H+l+
  Pavir.1KG214800.1.p 102 CRTIKKFECKAHMAIGLR-NGKWGVVVFQQEHTHPLV 137
                          ******************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1612137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEFDTIEEAA KVYNDYAFKV GFGTRVGSSR KSNVTKQVIR KEFECTHARK PAECEGSGSA  60
ATNDLATANT SKKRRPLADP ATANSSKKKR PSSMLTTASR KCRTIKKFEC KAHMAIGLRN  120
GKWGVVVFQQ EHTHPLVKMI GRRKHLRSHR HISWADYELL KTLHQRNIST MQIMGILADF  180
HGGIPNLTYT SKDGSNIRTH LRKRQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17289KRRPLADPATANSSKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG214800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821875.12e-87protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBLA0A368QKN68e-78A0A368QKN6_SETIT; Uncharacterized protein
TrEMBLK3ZL597e-76K3ZL59_SETIT; Uncharacterized protein
STRINGSb03g011225.12e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-12FAR1-related sequence 5