PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG248100.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 211aa    MW: 21975.6 Da    PI: 6.7835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG248100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-1574116855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ErrRR+r+N+++  Lr+++P+      +K++Ka+iL  A+eYI +Lq
  Pavir.1KG248100.4.p  74 TERRRRRRLNDRLYALRSVVPNI-----TKMDKASILGDAIEYILQLQ 116
                          6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.54566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1872135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1772121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1773129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1274116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-781112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDPAIGDSLE CLLWDCLESE ALQSLCIGAG AGGGSSQQHR DGYSSAPDAD SNSSAATAGA  60
GSIGSRPGSS IVVTERRRRR RLNDRLYALR SVVPNITKMD KASILGDAIE YILQLQQLER  120
QLLAELALLE AGAGAHHLLV GTPMPSAGAR AGTGEDDVRA GHAAVSPTKR VKRSPSLSSP  180
AASRHSPSSP PVNALQEQMA LFCDNRQGDH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14721161054Transcription factor MYC2
5gnj_B7e-14721161054Transcription factor MYC2
5gnj_E7e-14721161054Transcription factor MYC2
5gnj_F7e-14721161054Transcription factor MYC2
5gnj_G7e-14721161054Transcription factor MYC2
5gnj_I7e-14721161054Transcription factor MYC2
5gnj_M7e-14721161054Transcription factor MYC2
5gnj_N7e-14721161054Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481ERRRRRRL
27580RRRRRR
37885RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG248100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.13e-42transcription factor bHLH35 isoform X1
TrEMBLA0A3L6RTN11e-83A0A3L6RTN1_PANMI; Uncharacterized protein
STRINGPavir.Aa02630.1.p3e-86(Panicum virgatum)
STRINGPavir.J16319.1.p3e-87(Panicum virgatum)