PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG250800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 317aa    MW: 33043.9 Da    PI: 10.2131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG250800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30237294359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  +p ++++tYeg+H+h+
  Pavir.1KG250800.1.p 237 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 294
                          99***********************9888****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-15189233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-31223294IPR003657WRKY domain
PROSITE profilePS5081130.262230296IPR003657WRKY domain
SuperFamilySSF1182901.57E-25231294IPR003657WRKY domain
SMARTSM007742.9E-34235295IPR003657WRKY domain
PfamPF031064.2E-25237293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MITMDDLMSC GGGDSGGGGA SVVPGGDGQA TRPRPQQMMM EAVGDHQLTV SRIRTAVSVL  60
GRRTGHARFR RGPAAVVVEH PSSSPDHQQP SGSVAAPGVV LDLVDFVKGR GRRDEAAFSA  120
SASGGSSSLP STTTLTSLTA GEGSVSNGRF PPVGGGHAAG TPRPPAVSMP QQPAAPDYHY  180
TPGAAPGSKC AGRARSENDA GKAHAVRCHC SKKRKSRVRR VVRVPAISSR NADIPPDDYS  240
WRKYGQKPIK GSPYPRGYYK CSTVRGCPAR KHVERDPGEP AMLIVTYEGD HRHDGQQGRG  300
DADAAAAPPE HMSTTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20223294272WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG250800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946851e-107FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825254.11e-146WRKY transcription factor WRKY51-like
TrEMBLA0A3L6RVR91e-162A0A3L6RVR9_PANMI; Putative WRKY transcription factor 11
STRINGPavir.J08016.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.24e-38WRKY DNA-binding protein 11