PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG260900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 412aa MW: 45123.8 Da PI: 5.1992

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG260900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.3	4.7e-16	304	349	7	52
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ed+ + +++ kdAAkeL++++T LKr CR+++ +RWP Rki s+ Pavir.1KG260900.1.p 304 MEDVLNRMHMTKKDAAKELNISATSLKRLCRKNNTNRWPGRKIISI 349 57788899***********************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.97	287	369	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-15	304	348	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MDVEPPPLPP PCDLVAPAAL ATTDPTPSFE ALFDDIVLPD LGTMSLYDEF MDDGDDEVDA 60 LIRSVEDASN TDMTTALAEH PAVHPAEEDF VPFVRGQLDC SNCRSVREVL HESANHKLHV 120 AIHVVADHGT FQHAVFDRTY IDADGQIILN EMSYLDLRQR THEWVKEYVA NTVEMLKEDT 180 SGQLKDYACS PFHSAVCTNA STAADNDPHR ELELDMLKHI FSSPTAPTEA VAPPDEAPQP 240 ATRAEENIVN PDGILFGAAN WRGAVLSRPA ILESFQVAVQ DGVSGTSASH LPAKQRKRMS 300 GFPMEDVLNR MHMTKKDAAK ELNISATSLK RLCRKNNTNR WPGRKIISIN NKIKKLEEAA 360 HKNVGVRGLL AFKEKIDKLK IERAQLYSSF VGGLQETEKH NGGGAGSSGS K*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MDVEPPPLPP PCDLVAPAAL ATTDPTPSFE ALFDDIVLPD LGTMSLYDEF MDDGDDEVDA  60
LIRSVEDASN TDMTTALAEH PAVHPAEEDF VPFVRGQLDC SNCRSVREVL HESANHKLHV  120
AIHVVADHGT FQHAVFDRTY IDADGQIILN EMSYLDLRQR THEWVKEYVA NTVEMLKEDT  180
SGQLKDYACS PFHSAVCTNA STAADNDPHR ELELDMLKHI FSSPTAPTEA VAPPDEAPQP  240
ATRAEENIVN PDGILFGAAN WRGAVLSRPA ILESFQVAVQ DGVSGTSASH LPAKQRKRMS  300
GFPMEDVLNR MHMTKKDAAK ELNISATSLK RLCRKNNTNR WPGRKIISIN NKIKKLEEAA  360
HKNVGVRGLL AFKEKIDKLK IERAQLYSSF VGGLQETEKH NGGGAGSSGS K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG260900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444338.1	1e-128	uncharacterized protein LOC8070087
TrEMBL	A0A3L6RPH1	0.0	A0A3L6RPH1_PANMI; Uncharacterized protein
STRING	Pavir.Ab01364.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14429	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	2e-06	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG260900.1.p