PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG265000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 562aa    MW: 64717.7 Da    PI: 9.3365
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG265000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.81e-2411109191
                 FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          kf+n Y++ +GF v+++++  +   krn+ei++ t++C+++g ++++k+          er t++  +t+Ck++++++++ +g w+vt+l
  Pavir.1KG265000.1.p  11 KFFNYYGYLAGFAVVIAHHAWTqsrKRNNEIIRITYKCNRQGMQDTSKEGntqeeeIIAERDTNVLVKTNCKCCMVISER-KGIWRVTRL 99 
                          6****************99766667999*****************99998554444344566*****************9.********* PP

                 FAR1  82 eleHnHelap 91 
                          +leHnH+++p
  Pavir.1KG265000.1.p 100 QLEHNHPMSP 109
                          *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2311109IPR004330FAR1 DNA binding domain
PfamPF105512.3E-34125217IPR018289MULE transposase domain
PROSITE profilePS509669.681357393IPR007527Zinc finger, SWIM-type
SMARTSM005759.6E-6368395IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEFSTSSEGH KFFNYYGYLA GFAVVIAHHA WTQSRKRNNE IIRITYKCNR QGMQDTSKEG  60
NTQEEEIIAE RDTNVLVKTN CKCCMVISER KGIWRVTRLQ LEHNHPMSPG ENPRSIRYYQ  120
NFGDCVSFDT TYLTNKYHMP FAPFAGITGH GLTCIFGCAL ISDETTDTFK WLFQTFLEAI  180
GGKEPISIMT DQDGAMRSAI AQIFPNASHR SCVFHIKYKA ELKCETWAPV WFKQEFYPFI  240
NTTSRSEGTN ARYKRNVGPQ YSITSYLKEY ERIQETIYDN ERQADHETNI KKKSKLWSNY  300
CIEQQAQEAY NLKIFKKFQW QLRCATKLQA DELEKGKLYK VYTTPDHPFK EFRSRTYIVA  360
VDQQNQDFSC ICAKFQKDGM LCCHILKVMV KNDISKIPEK YIIDRWRKKE QKMFCNRPIN  420
LPIEATALKY NNLSLMAAEM NSEGSKTEER YSYLSKEIDR IIKELKNMDS EKQPETKEQS  480
NGSTNINNSQ TNSIIILKDP DIAATKGRPS KSNKRKKPIA EQMRSGKKKY NCQKCNGSGH  540
NTATCTATTQ AKGKAGAATA K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.280090.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG265000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321374.11e-124protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK3XQ571e-149K3XQ57_SETIT; Uncharacterized protein
STRINGPavir.J08293.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-49FAR1-related sequence 5