PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG292800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 193aa    MW: 21151.5 Da    PI: 10.6485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG292800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-095092447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         WT++E+  ++ +  ++ ++ Wk+ + +    + + q+ s++qky
  Pavir.1KG292800.1.p 50 WTEDEHRHFLAGLGKYKSN-WKAMSMEYLPSKNASQIASHYQKY 92
                         *****************99.****7655559************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1784297IPR017930Myb domain
SuperFamilySSF466897.48E-114396IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-94595IPR006447Myb domain, plants
SMARTSM007170.00144695IPR001005SANT/Myb domain
CDDcd001671.02E-45092No hitNo description
PfamPF002492.4E-65092IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-75094IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSTPQRRRRR LRRAQSRSRS QRGLPSAVGG GGGAPEGRQV RRKKKKALMW TEDEHRHFLA  60
GLGKYKSNWK AMSMEYLPSK NASQIASHYQ KYQNREKQRE RDECRRASIH DITEPASAAA  120
VAVALAGGDA AAAWRKDDGD LPRARAEPSA RGQESDPREP PVQSDEPPTR GDGPAGTGEE  180
FPGPDDPGTL LT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRRRLRR
24045RRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG292800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986850.14e-50transcription factor SRM1
TrEMBLA0A3L6QFU22e-71A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like
STRINGPavir.Ab01491.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-17MYB family protein