PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG298000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 124aa MW: 14528.2 Da PI: 7.7916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG298000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.2	1.4e-35	23	113	1	92
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+ k+++ ++ ++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+ Pavir.1KG298000.1.p 23 LPPGFRFHPTDEELITHYLAWKAADPRFAP-LAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDR 111 79**********************9877.57***********998999*********************************9 PP NAM 91 ev 92 e Pavir.1KG298000.1.p 112 ES 113 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-39	15	115	IPR003441	NAC domain
PROSITE profile	PS51005	35.801	23	124	IPR003441	NAC domain
Pfam	PF02365	2.0E-17	24	112	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MEHDVHHHHR HHQQQQRQEA MELPPGFRFH PTDEELITHY LAWKAADPRF APLAVGEADL 60 NKCEPWDLPA RATMGEKEWY FFCVKDRKYP TGLRTNRATE SGYWKATGKD RESPSGGKGP 120 RRHE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-34	13	118	5	110	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.31667	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG298000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065898	1e-131	BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBank	KJ728021	1e-131	KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001354931.1	2e-64	uncharacterized protein LOC100281380
Refseq	XP_008677193.1	2e-64	NAC domain protein NAC5 isoform X1
Swissprot	Q9FLJ2	6e-50	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3L6RW05	2e-66	A0A3L6RW05_PANMI; NAC domain-containing protein 92-like
STRING	Pavir.J24971.1.p	6e-89	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23139	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	3e-51	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Pavir.1KG298000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]