PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG301400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 926aa MW: 105585 Da PI: 8.3794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG301400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.4e-17	206	285	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ ++GF +r ++s+++++ + t ++ vC + gk+++e+++ ++r+gC a++++ ++++g w+v++ eHnH+++ Pavir.1KG301400.1.p 206 EFYNLYSWQIGFGIRYDRSRRNSQRT-KTIQDIVCGCAGKPRKENSR---------SSRCGCPAMMRIARSNSGGWYVKEHIAEHNHQMS 285 6****************9995555.67889****9997665.........99****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-14	206	285	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-31	407	500	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	689	727	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MGEEGGFAGT FDLELSPMGP GLIGEEEPVP GGRIEWAWKN SEQVDLNAPT TGLLSSVVID 60 LNEEPSGDLN AVLMEAQGEV PDAARMDKSD VQEGLESESS AVCDVSEDTT YAGYESGNEQ 120 RESSLASSDF TNNEHLDGGN HTAAVQSRQG WKKRPRVGQI PDEQEETTMN PTALEKALKS 180 YAIRKNGLVV QPTVGTHFDS MAEAFEFYNL YSWQIGFGIR YDRSRRNSQR TKTIQDIVCG 240 CAGKPRKENS RSSRCGCPAM MRIARSNSGG WYVKEHIAEH NHQMSQSFAE KQLWRSHRHI 300 DTHTKRLIKH LRDNNVNLSK VFSIISSFFG DYGNAPFTKR SVRSLCAKIA RDNATDDIGK 360 TVALFSKLKE QDPDFTYSVQ LDDKSRVRTL LWTNGRSRRQ YACFGDVITF DTTYKTNLYD 420 MPFGLFIGVN NHFQSIVLGG VLMRNETIES FKWIFTEFVR LMGGKQPVTI LTDQSKAMEA 480 AIKDVFPETT HRWCRWHVLR KAKEHLGDLY TRRSGFKQEF HKIINSMLTI EEFEYAWQLM 540 LVKYKLQNNS FLSQIYENRS KWAKPYFKGK FCAGQTSTQR SESGNSMLKR YVGSSCPMHQ 600 FVQMYQQLQF DREEKESIEE QASKLDGRRI KYNIPIEAHA ARVYTRAMYE KFGQLIFESG 660 NFVATEIIPH MRYKTKHVRA DRREKWEKVE FQIDVINNGG EYICECGLAE HMGILCPHII 720 RVLIQYGVQE IPRKHIVKRW TMNARDMLPP HLEHYQKDRA ALHSQTLRHS SLYLAALEVV 780 DLGDSNVKAY EIAMKHLLQA KSELQELSAE RDGLSLLEQC ADQSTRDACA AQPTEPNVAS 840 MYPPERLNKR GRPSNSRDKP PYEQGRKRVR CYRTQQAAEQ SFEVAGTTTS RRKITCSRCK 900 LPGHTKNSCK GPAPPEFLPL DGQIW*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MGEEGGFAGT FDLELSPMGP GLIGEEEPVP GGRIEWAWKN SEQVDLNAPT TGLLSSVVID  60
LNEEPSGDLN AVLMEAQGEV PDAARMDKSD VQEGLESESS AVCDVSEDTT YAGYESGNEQ  120
RESSLASSDF TNNEHLDGGN HTAAVQSRQG WKKRPRVGQI PDEQEETTMN PTALEKALKS  180
YAIRKNGLVV QPTVGTHFDS MAEAFEFYNL YSWQIGFGIR YDRSRRNSQR TKTIQDIVCG  240
CAGKPRKENS RSSRCGCPAM MRIARSNSGG WYVKEHIAEH NHQMSQSFAE KQLWRSHRHI  300
DTHTKRLIKH LRDNNVNLSK VFSIISSFFG DYGNAPFTKR SVRSLCAKIA RDNATDDIGK  360
TVALFSKLKE QDPDFTYSVQ LDDKSRVRTL LWTNGRSRRQ YACFGDVITF DTTYKTNLYD  420
MPFGLFIGVN NHFQSIVLGG VLMRNETIES FKWIFTEFVR LMGGKQPVTI LTDQSKAMEA  480
AIKDVFPETT HRWCRWHVLR KAKEHLGDLY TRRSGFKQEF HKIINSMLTI EEFEYAWQLM  540
LVKYKLQNNS FLSQIYENRS KWAKPYFKGK FCAGQTSTQR SESGNSMLKR YVGSSCPMHQ  600
FVQMYQQLQF DREEKESIEE QASKLDGRRI KYNIPIEAHA ARVYTRAMYE KFGQLIFESG  660
NFVATEIIPH MRYKTKHVRA DRREKWEKVE FQIDVINNGG EYICECGLAE HMGILCPHII  720
RVLIQYGVQE IPRKHIVKRW TMNARDMLPP HLEHYQKDRA ALHSQTLRHS SLYLAALEVV  780
DLGDSNVKAY EIAMKHLLQA KSELQELSAE RDGLSLLEQC ADQSTRDACA AQPTEPNVAS  840
MYPPERLNKR GRPSNSRDKP PYEQGRKRVR CYRTQQAAEQ SFEVAGTTTS RRKITCSRCK  900
LPGHTKNSCK GPAPPEFLPL DGQIW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.35066	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG301400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185807.1	0.0	uncharacterized protein LOC109771528
TrEMBL	A0A2X0SS69	0.0	A0A2X0SS69_WHEAT; Uncharacterized protein
STRING	Pavir.J04547.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-88	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG301400.1.p