PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG301400.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 853aa MW: 97948.9 Da PI: 9.1713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG301400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.1e-17	133	212	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ ++GF +r ++s+++++ + t ++ vC + gk+++e+++ ++r+gC a++++ ++++g w+v++ eHnH+++ Pavir.1KG301400.2.p 133 EFYNLYSWQIGFGIRYDRSRRNSQRT-KTIQDIVCGCAGKPRKENSR---------SSRCGCPAMMRIARSNSGGWYVKEHIAEHNHQMS 212 6****************9995555.67889****9997665.........99****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-14	133	212	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-31	334	427	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	616	654	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MEAQGEVPDA ARMDKSDVQE GLESESSAVC DVSEDTTYAG YESGNEQRES SLASSDFTNN 60 EHLDGGNHTA AVQSRQGWKK RPRVGQIPDE QEETTMNPTA LEKALKSYAI RKNGLVVQPT 120 VGTHFDSMAE AFEFYNLYSW QIGFGIRYDR SRRNSQRTKT IQDIVCGCAG KPRKENSRSS 180 RCGCPAMMRI ARSNSGGWYV KEHIAEHNHQ MSQSFAEKQL WRSHRHIDTH TKRLIKHLRD 240 NNVNLSKVFS IISSFFGDYG NAPFTKRSVR SLCAKIARDN ATDDIGKTVA LFSKLKEQDP 300 DFTYSVQLDD KSRVRTLLWT NGRSRRQYAC FGDVITFDTT YKTNLYDMPF GLFIGVNNHF 360 QSIVLGGVLM RNETIESFKW IFTEFVRLMG GKQPVTILTD QSKAMEAAIK DVFPETTHRW 420 CRWHVLRKAK EHLGDLYTRR SGFKQEFHKI INSMLTIEEF EYAWQLMLVK YKLQNNSFLS 480 QIYENRSKWA KPYFKGKFCA GQTSTQRSES GNSMLKRYVG SSCPMHQFVQ MYQQLQFDRE 540 EKESIEEQAS KLDGRRIKYN IPIEAHAARV YTRAMYEKFG QLIFESGNFV ATEIIPHMRY 600 KTKHVRADRR EKWEKVEFQI DVINNGGEYI CECGLAEHMG ILCPHIIRVL IQYGVQEIPR 660 KHIVKRWTMN ARDMLPPHLE HYQKDRAALH SQTLRHSSLY LAALEVVDLG DSNVKAYEIA 720 MKHLLQAKSE LQELSAERDG LSLLEQCADQ STRDACAAQP TEPNVASMYP PERLNKRGRP 780 SNSRDKPPYE QGRKRVRCYR TQQAAEQSFE VAGTTTSRRK ITCSRCKLPG HTKNSCKGPA 840 PPEFLPLDGQ IW*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MEAQGEVPDA ARMDKSDVQE GLESESSAVC DVSEDTTYAG YESGNEQRES SLASSDFTNN  60
EHLDGGNHTA AVQSRQGWKK RPRVGQIPDE QEETTMNPTA LEKALKSYAI RKNGLVVQPT  120
VGTHFDSMAE AFEFYNLYSW QIGFGIRYDR SRRNSQRTKT IQDIVCGCAG KPRKENSRSS  180
RCGCPAMMRI ARSNSGGWYV KEHIAEHNHQ MSQSFAEKQL WRSHRHIDTH TKRLIKHLRD  240
NNVNLSKVFS IISSFFGDYG NAPFTKRSVR SLCAKIARDN ATDDIGKTVA LFSKLKEQDP  300
DFTYSVQLDD KSRVRTLLWT NGRSRRQYAC FGDVITFDTT YKTNLYDMPF GLFIGVNNHF  360
QSIVLGGVLM RNETIESFKW IFTEFVRLMG GKQPVTILTD QSKAMEAAIK DVFPETTHRW  420
CRWHVLRKAK EHLGDLYTRR SGFKQEFHKI INSMLTIEEF EYAWQLMLVK YKLQNNSFLS  480
QIYENRSKWA KPYFKGKFCA GQTSTQRSES GNSMLKRYVG SSCPMHQFVQ MYQQLQFDRE  540
EKESIEEQAS KLDGRRIKYN IPIEAHAARV YTRAMYEKFG QLIFESGNFV ATEIIPHMRY  600
KTKHVRADRR EKWEKVEFQI DVINNGGEYI CECGLAEHMG ILCPHIIRVL IQYGVQEIPR  660
KHIVKRWTMN ARDMLPPHLE HYQKDRAALH SQTLRHSSLY LAALEVVDLG DSNVKAYEIA  720
MKHLLQAKSE LQELSAERDG LSLLEQCADQ STRDACAAQP TEPNVASMYP PERLNKRGRP  780
SNSRDKPPYE QGRKRVRCYR TQQAAEQSFE VAGTTTSRRK ITCSRCKLPG HTKNSCKGPA  840
PPEFLPLDGQ IW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.35066	1e-180	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG301400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185807.1	0.0	uncharacterized protein LOC109771528
TrEMBL	A0A2X0SS69	0.0	A0A2X0SS69_WHEAT; Uncharacterized protein
STRING	Pavir.J04547.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-89	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG301400.2.p