PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG305100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 342aa    MW: 36267.5 Da    PI: 9.7105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG305100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19173222255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Pavir.1KG305100.1.p 173 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 222
                          7********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-31172231IPR001471AP2/ERF domain
SMARTSM003809.0E-34173236IPR001471AP2/ERF domain
CDDcd000189.62E-18173231No hitNo description
SuperFamilySSF541719.81E-22173231IPR016177DNA-binding domain
PROSITE profilePS5103225.132173230IPR001471AP2/ERF domain
PfamPF008471.8E-12173222IPR001471AP2/ERF domain
PRINTSPR003673.0E-11174185IPR001471AP2/ERF domain
PRINTSPR003673.0E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADVMSLICT EKVQRSKVEH RRHGGKRPLP EPDDEEAQPA SLSPASVPTT SLERRHFPRQ  60
RQQQQQIVLG RGGAGVDCDE YWPAPAPAQY HVQTHQQQGA YYSTMAYYDV GAGSSATSSH  120
QRRPDHLAAA AVPPAAAGSH QQATPEAGTA AGVATAGQAV EVQEQGNVTR SRHYRGVRRR  180
PWGKWAAEIR DPAKAARVWL GTFDTAEAAA AAYDDAALRF KGAKAKLNFP ERVRGRTGQG  240
AFLVSPCVPQ QQPPSPSSMP TAAAPFPGLI RYAQLLQGWN SGSIAASNTG DLAPPAALPM  300
PPAQASSSVQ ILDFSTQQLL RGSPTTFGGP PPPTSASMSR D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24170233266ATERF1
3gcc_A4e-24170233266ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG305100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057498e-87AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058428e-87AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149588e-87AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126108e-87CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313308e-87CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821338.11e-123ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3L6QBV21e-131A0A3L6QBV2_PANMI; Ethylene-responsive transcription factor ABI4-like
STRINGGRMZM2G016434_P011e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-26related to AP2 6l