PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG322500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 530aa    MW: 56639.6 Da    PI: 5.0159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG322500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.37.3e-2061381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 
                          lppG+ F P+de  v +yL +++ g  l+++  + + d +++ P++L  + +++++e +fF++ + +  +g+r++r  +  g W+  +t 
  Pavir.1KG322500.1.p   6 LPPGLLFAPEDEVAVEHYLLPRLLGWALPFDGLVLDDDPLSAPPRELL-ERNGRREEAFFFAEGKARCGKGSRQKRtCAGGGWWEgqKTC 94 
                          79****************************88999************7.446677899******************55556667633333 PP

                  NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + + l+      e+ + kk L f+ g a +  ++ Wvmhey++
  Pavir.1KG322500.1.p  95 AEGDKLRVaggVLEAAWRKKALNFHCGGAGNKGSAGWVMHEYAV 138
                          33322222222445599********99999989*********86 PP
2NAM74.92e-231753031128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 
                          lppGf F P+d ++v  yL ++v g++l+l+  i + d +++ Pw+L  + ++++++ +fF+  + k+++g+r++r  +  g+W+   t 
  Pavir.1KG322500.1.p 175 LPPGFLFAPEDGDVVASYLLPRVLGQPLPLDGLILDDDPLSAPPWELL-ERNGRREDAFFFALGQAKTSKGSRQKRtCAGGGFWNgeRTC 263
                          79****************************999**************7.445677899******************77789***954455 PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d + l+   + + + k+ L f   +a +  +t Wvmhey++
  Pavir.1KG322500.1.p 264 ADGQKLRVgAEVVEWRKRALSFQ--HAGDKGSTGWVMHEYAI 303
                          55555554255556788899998..3444448********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-273156IPR003441NAC domain
PROSITE profilePS5100525.1066157IPR003441NAC domain
PfamPF023659.1E-137137IPR003441NAC domain
SuperFamilySSF1019417.19E-30168322IPR003441NAC domain
PROSITE profilePS5100528.401175322IPR003441NAC domain
PfamPF023653.6E-14176302IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAAAGLPPGL LFAPEDEVAV EHYLLPRLLG WALPFDGLVL DDDPLSAPPR ELLERNGRRE  60
EAFFFAEGKA RCGKGSRQKR TCAGGGWWEG QKTCAEGDKL RVAGGVLEAA WRKKALNFHC  120
GGAGNKGSAG WVMHEYAVTA PEDLARSPLR LYHIRLSSYG RKQSGAMEVP RALGLPPGFL  180
FAPEDGDVVA SYLLPRVLGQ PLPLDGLILD DDPLSAPPWE LLERNGRRED AFFFALGQAK  240
TSKGSRQKRT CAGGGFWNGE RTCADGQKLR VGAEVVEWRK RALSFQHAGD KGSTGWVMHE  300
YAITAPDHLA ESQLRLYRIR FSGHGKKRKR GAEADPSAEE SAAPTAARRR VAEEDDTLFG  360
MLLPSSSDPI CSSVVLADLA DGNAEDDTLL HVLMLSSDPT CSTTVLAEQA DGNGVNGEEY  420
HAAAPATVSA GQDLTSSGID TSWDGFQFLE NLDIDELLRS IGDLPSPNLN ADAEISSFFS  480
QTAAASAPPY AGLGAGLVAP SAPGMHHGCM DRPADSFFPP VPNQSYAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG322500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7F7A70.0A0A2T7F7A7_9POAL; Uncharacterized protein
STRINGPavir.Ab01826.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-09NAC domain containing protein 3