PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG324600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 277aa    MW: 28828.4 Da    PI: 11.5621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG324600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-21123172255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          gy+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++aa+++l+g
  Pavir.1KG324600.1.p 123 GYRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFLTPEDAARAYDAAKLRLRG 172
                          8********.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-14123172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31123181IPR001471AP2/ERF domain
PROSITE profilePS5103224.974123180IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-22123181IPR016177DNA-binding domain
SMARTSM003801.2E-33123186IPR001471AP2/ERF domain
CDDcd000184.06E-28124182No hitNo description
PRINTSPR003671.1E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.1E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRPPPSSTVP TPPPLREATE AAAIVAALAQ VIAGGRGATL TTPRPTAPPA PSPVVPPWPP  60
TAVGSHRGDV SPATCQWSAP AHIVSVPQDR SAPAQCLLPS PARAPMASAA RSRAGDGGAA  120
ARGYRGVRRR PWGKWAAEIR DPKKAARVWL GTFLTPEDAA RAYDAAKLRL RGSRAKLNFP  180
EDAASLRHPP LAPEGSRQPG SGWNRTIDRS PCPEMVRRRD TTDGFTGGGD NGRFLGSWNI  240
GTSSPSALLC GSHGTGSTKT EDAGNGMDKR SSARHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22119180163ATERF1
3gcc_A3e-22119180163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG324600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078521e-54AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
GenBankAP0056111e-54AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0057711e-54AP005771.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13.
GenBankAP0149581e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-54CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.13e-85ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2S3GQ771e-113A0A2S3GQ77_9POAL; Uncharacterized protein
STRINGPavir.J16062.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-23ERF family protein