PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG327500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 240aa    MW: 25280.9 Da    PI: 11.0225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG327500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-21101149355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIr p+    + +r++lg+f t+e+Aa+a++aa+++l+g
  Pavir.1KG327500.1.p 101 YRGVRRRP-WGKWAAEIRNPK----KaARVWLGTFATPEDAARAYDAAALRLRG 149
                          9*******.**********84....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-37100163IPR001471AP2/ERF domain
PROSITE profilePS5103225.343100157IPR001471AP2/ERF domain
PfamPF008474.0E-15100149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32100158IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22101158IPR016177DNA-binding domain
CDDcd000181.92E-21101159No hitNo description
PRINTSPR003673.5E-14101112IPR001471AP2/ERF domain
PRINTSPR003673.5E-14139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRPPLSSPAP ASLAEAAEEA VIVAALTHVI AHGRVAPSLA VPPCPLTATG CHGQAACRGE  60
PSPPSAHIVS ARDRSAREQG LMASAAPELP PMASACPPRS YRGVRRRPWG KWAAEIRNPK  120
KAARVWLGTF ATPEDAARAY DAAALRLRGS RAKLNFPEDA SSLRHPPAPV GSRRPGYGWD  180
RTLDRSPWPD MVPRRDNGRF LGPWSIGTSS LPPMPTCSTP PVVAALLSES RGTGSSGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2399162468ATERF1
3gcc_A7e-2399162468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG327500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056116e-56AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149586e-56AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821598.13e-78ethylene-responsive transcription factor ERF110-like
TrEMBLA0A3L6QL764e-88A0A3L6QL76_PANMI; Uncharacterized protein
STRINGPavir.Ab01891.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-22ERF family protein