PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG348000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 376aa    MW: 40019.2 Da    PI: 6.7925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG348000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82e-53201451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+ k+++ ++   +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+
  Pavir.1KG348000.1.p  20 LPPGFRFHPTDEELITHYLAWKAADPRFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDR 108
                          79*************************888.88***************998999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+l+ +++lvg+kktLvfy+grapkg kt Wvmheyrl
  Pavir.1KG348000.1.p 109 EILR-GKALVGMKKTLVFYTGRAPKGGKTGWVMHEYRL 145
                          ***9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6412180IPR003441NAC domain
PROSITE profilePS5100558.12620180IPR003441NAC domain
PfamPF023651.5E-2821145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEHDVHHHHQ QQQRQEAMEL PPGFRFHPTD EELITHYLAW KAADPRFAPR AVGEADLNKC  60
EPWDLPARAT MGEKEWYFFC VKDRKYPTGL RTNRATESGY WKATGKDREI LRGKALVGMK  120
KTLVFYTGRA PKGGKTGWVM HEYRLDGKHA AAAGSSSRLI SSIRAGASKD EWVLCRVFKK  180
SIEIEPPVVA AGGKRSPSGA ACTEVADVVG PSVSMADDLA ACALPPLMDV SGGSGAAMSL  240
SAAAAAAAGI ELPPPSQHVT CFSNALEGQF LNPPFGLLPA AGPAAADHLA MAAASASPFL  300
ASMMQAQYDG AAGVGGMVHE LLQEGGGWYS KLGERERLSG GASQDTGLTS EANANPAEIS  360
SRQHMDHHDA SLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-5561803165NO APICAL MERISTEM PROTEIN
1ut4_B8e-5561803165NO APICAL MERISTEM PROTEIN
1ut7_A8e-5561803165NO APICAL MERISTEM PROTEIN
1ut7_B8e-5561803165NO APICAL MERISTEM PROTEIN
4dul_A8e-5561803165NAC domain-containing protein 19
4dul_B8e-5561803165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.316670.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG348000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658980.0BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBankKJ7280210.0KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952889.10.0NAC domain-containing protein 92
RefseqXP_022679460.10.0NAC domain-containing protein 92
TrEMBLA0A3L6RW050.0A0A3L6RW05_PANMI; NAC domain-containing protein 92-like
STRINGPavir.J16488.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-84NAC domain containing protein 100