PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG364700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 720aa    MW: 79799.3 Da    PI: 7.0015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG364700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10931711397
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +  l +p   a +      +++ + l+d++ r  +v+l  +   ++  + +GW+ Fv+++ +k g+f++F+++gr++f   v++f
  Pavir.1KG364700.1.p  93 EEFLLIPPAVAHKLADL--TNQHVYLKDSEQRLSKVRL--SVVNDSLAFHQGWNIFVSDHSIKWGEFLMFEYTGRNTF--SVRIF 171
                          55688999888666444..4557***************..555566889************************99988..88877 PP
2B331.53.1e-106297021283
                          HTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3  12 ksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          ++++l lpk+  +++      ++ ++   + l+d+  r W v +  + ++  + +t GW++Fv an+L++gD + + 
  Pavir.1KG364700.1.p 629 TRKWLGLPKSLPNAIkqkrhASD-RNVNIILLKDPMKRLWPVLY--QENPVFVGFTVGWRHFVAANNLQAGDLCNLI 702
                          45567777777666654543222.2334688999**********..****************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1580174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.68781174IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-1581174IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-584174IPR003340B3 DNA binding domain
PfamPF023621.5E-889171IPR003340B3 DNA binding domain
CDDcd100171.99E-992171No hitNo description
PROSITE profilePS5086310.193618719IPR003340B3 DNA binding domain
SMARTSM010190.0053623718IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-11625704IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-10625706IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-9629718No hitNo description
PfamPF023625.0E-8629702IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MRPSESTEAM LCHDKPDRRS VPSIVSKEKK IDTSSGSKYK KRKMDHTLLQ KGKRSDNKIH  60
SDRVQEKKIC GGDKEKNKHT PFAFLKFIYN RFEEFLLIPP AVAHKLADLT NQHVYLKDSE  120
QRLSKVRLSV VNDSLAFHQG WNIFVSDHSI KWGEFLMFEY TGRNTFSVRI FGMNSHERSN  180
FKKDPKRVGH GVGSGPAPLD NNNENDACMH SQRKTVIMIL DSGASTHNED VVNLTTSDAD  240
STHHVTINTN EDIERVESGV GNLPDGECGT KCISAACSEG KTSSEKVVND AAPLTHENDA  300
RVGHELQVHD LDEDLLRKQG ISCIPLGSII AVEKHQIHNN INISQNFCRK YAVPGGFRCL  360
EKWWRAGIVN IRAALDGFVL IEPENTKKTD SKLVDSYGSI GLNTVNCSEG NHTHVPPVFT  420
MTVKEPLGAD RVSKCRLVEN DIDHSINEKC GGAAVQIETQ GEQLKPVGSI VNSQSNNIPV  480
SANAVVPGKY SAIGLNPVGP EVTRTFAEPM LTVPIEKAST PDEISKYGSS KTEIDHNVSG  540
QGTVVQLETK MDQVEPVGSS VCSQSSNNAV YGDHVAAQVS EKCFSKQEGR KFIDCVVPES  600
LLPMKDKIME SDDHSLLKFN LQLCIPDTTR KWLGLPKSLP NAIKQKRHAS DRNVNIILLK  660
DPMKRLWPVL YQENPVFVGF TVGWRHFVAA NNLQAGDLCN LIEEPDDDEP VYSVLITRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG364700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809292.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_025809300.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLA0A2S3GR500.0A0A2S3GR50_9POAL; Uncharacterized protein
STRINGPavir.Ab02132.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-08B3 family protein