PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG372800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 264aa    MW: 27955.4 Da    PI: 4.535
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG372800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07446541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Pavir.1KG372800.1.p  4 QCDACEAAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                         7******99*********************6678888888877 PP
2zf-B_box26.91e-085385234
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                         + ++C+ ++ek + +fC +++ l+C+dC + +H
  Pavir.1KG372800.1.p 53 KLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                         5789**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
SMARTSM003364.6E-9447IPR000315B-box-type zinc finger
PfamPF006432.2E-5447IPR000315B-box-type zinc finger
SMARTSM003365.4E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7885299IPR000315B-box-type zinc finger
PfamPF006431.5E-65395IPR000315B-box-type zinc finger
CDDcd000213.09E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKIQCDACEA AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SAKLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGLASAA SACGDAGDAH  120
DSDHHPPPKA AVEPPPQPAV SAAAAQQVPS PPPFLPQGWA VDELLQFSDY ESGDKLQKES  180
PLGFKELEWF ADIDLFYDQA PPKAGRALAE VPELFGSQAA SDAAYYRPSK AGAGAGAGVR  240
QSKKARIEVT DDEEDYLIVP DLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.15781e-112leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG372800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696720.0EU969672.1 Zea mays clone 333885 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953029.11e-171B-box zinc finger protein 25
SwissprotQ9SID17e-80BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A368PNF31e-169A0A368PNF3_SETIT; Uncharacterized protein
STRINGPavir.Ab02237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.16e-59DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]