PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG373400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 244aa    MW: 26923.6 Da    PI: 8.0049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG373400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-0788150146
                          TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 
                          r++WT+eE ++lv a      +            Wk+I ++++       +Rt  qcksr+ k
  Pavir.1KG373400.1.p  88 RMNWTKEENLKLVSAWLHNSVDsvkgnaqkednFWKKIVAEFNssvsvdRKRTVSQCKSRYTK 150
                          799*************999999***************************99**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-487154IPR001005SANT/Myb domain
PROSITE profilePS500906.4788152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-488151IPR009057Homeodomain-like
CDDcd001672.25E-490150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPPYPPFGGF HHSSPYEANY NFSSSAFGRG TPSEGGQSSS PVESMAFGPG GAGSSLASPI  60
SPAPQNNNDV ASTQVWSDNS DDGKKGGRMN WTKEENLKLV SAWLHNSVDS VKGNAQKEDN  120
FWKKIVAEFN SSVSVDRKRT VSQCKSRYTK TNKLIVHFNG CWIRMKRAHD SGESDDQIMG  180
NLMQSDNQDL HMSKRVKHTE SGAYTSSTQD NEEVEPHERS RQKKAKDRLK GKETKCCQEG  240
EEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG373400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6Q4H68e-69A0A3L6Q4H6_PANMI; Uncharacterized protein
STRINGPavir.J18042.1.p1e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610