PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG382700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 679aa    MW: 71542 Da    PI: 6.5509
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG382700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.4e-14274333155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Pavir.1KG382700.1.p 274 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 333
                          57*******************666664477446**********99*************98 PP
2AP249.88.6e-16376427155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Pavir.1KG382700.1.p 376 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 427
                          89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-16274343IPR016177DNA-binding domain
PfamPF008472.9E-11274333IPR001471AP2/ERF domain
CDDcd000185.09E-20274343No hitNo description
SMARTSM003801.0E-28275347IPR001471AP2/ERF domain
PROSITE profilePS5103218.861275341IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-15275342IPR001471AP2/ERF domain
PRINTSPR003673.5E-6276287IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-18376437IPR016177DNA-binding domain
CDDcd000181.55E-23376437No hitNo description
PfamPF008473.0E-10376427IPR001471AP2/ERF domain
SMARTSM003808.1E-34377441IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18377436IPR001471AP2/ERF domain
PROSITE profilePS5103219.467377435IPR001471AP2/ERF domain
PRINTSPR003673.5E-6417437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP NQDSSPAAGI DISGASDFYG LTTQQGSDGH LGVPGLRDDH  60
ASYGIMEAFN RGKQETQDWN MRGLDYNGGA SELSMLVGSS GGGSGKRAVG DSEPKLEDFL  120
GGNSFVSEQD QSGGYLFSGV PMASSTNSNS GSNTMEISMI KTWLRNNNQL PQPQPPATTH  180
QPQPEEISTD ASASSFGCAN GTVAGGSSQS LALSISTGSH LPMVVAGGGG ASGAAASDST  240
SSENKRANGA MDSPSSAIEA VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE  300
GQSRKGRQVY LGGYDKEDKA ARAYDLAALK YWGTTTTTNF PISNYEKELE EMKHMTRQEY  360
IAYLRRNSSG FSRGASKYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST EEEAAEAYDI  420
AAIKFRGLNA VTNFDMSRYD VKSILESSTL PVGGAARRLK DAVDHVEAGG ATIWRADMDG  480
AVISQLADAG IGAYASYGAH HAWPTIAFQQ PSPLTVHYPY GHAPPRGWCK PEQDAAAAAA  540
AAHSLQDLQQ LHLGSAAHHN FFQASSSSTV YNGGAAGYHQ AGLGGGGGGS FLMPSSTVVA  600
DQGHSSTANQ GSTCSYGDDQ EGKLVGYDAM VATTTAGGDP YAAARSGYQF SQGSGSTVSI  660
ARANGYSNNW SSPFNGMG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG382700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824559.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2S3GQY00.0A0A2S3GQY0_9POAL; Uncharacterized protein
STRINGPavir.J07914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-125AP2 family protein