PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG403900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 219aa MW: 25255.6 Da PI: 8.4765

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG403900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.6	1.2e-24	24	111	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ ++GF+vrk+ +++s+++g++t+ ++vCs+eg+r++++++ + ++ raetrt+Cka++++++++ +++ev++++leHnH+l Pavir.1KG403900.1.p 24 FWVAYGGRTGFDVRKRCTNTSTMDGKVTSCRYVCSNEGHRRKKESE-HARKCFRAETRTDCKARMVISLDRgAENYEVIDVVLEHNHPL 111 99**************************************9999.89999***************9*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-20	24	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAEVDRKIPE LGLRFSNPDE GWLFWVAYGG RTGFDVRKRC TNTSTMDGKV TSCRYVCSNE 60 GHRRKKESEH ARKCFRAETR TDCKARMVIS LDRGAENYEV IDVVLEHNHP LYLPQTFHLM 120 KSQRKISELQ AFEIETADDS GIRPKTAHEL ATRQVGGPLN LSYTCRDRKN YLQSRRQREL 180 AFGQAGSMLK YFHDKIAENP SFQYALLLDC EEHITNIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG403900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004005	0.0	AP004005.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1188_F05.
GenBank	AP005521	0.0	AP005521.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0477F03.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688484.1	1e-144	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A287W7H4	1e-119	A0A287W7H4_HORVV; Uncharacterized protein
TrEMBL	A0A446IZQ8	1e-114	A0A446IZQ8_TRITD; Uncharacterized protein
STRING	Sb02g029930.1	1e-130	(Sorghum bicolor)
STRING	Sb09g018290.1	1e-128	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-23	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG403900.1.p