PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG409600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 193aa    MW: 22610.4 Da    PI: 10.4003
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG409600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.69.9e-142713491
                 FAR1 34 vCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                         +C ++gk++++++k             +  +r+t+++ +t+C   ++vk+  +g w++++l+l+HnHel+p
  Pavir.1KG409600.1.p  2 KCHRYGKESKQERKeetkheiiaavaqKGPKRKTNVQVKTNCPVVMVVKEI-NGIWRIIRLDLDHNHELSP 71
                         7******999999899*********9999999*******************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-11271IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKCHRYGKES KQERKEETKH EIIAAVAQKG PKRKTNVQVK TNCPVVMVVK EINGIWRIIR  60
LDLDHNHELS PGNRNQLFSG RKYMTDMEKA MIRTLNDNNI PTRKMISILS YLRGGLLALP  120
YKNKDVANYR TKINREVTGN DMSKALEYFR NRKAKDPTFF YKFDVDDDMK VKNLFLERRL  180
ITEILCRVWG LC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG409600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959040.29e-90protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0A9Q7B22e-79A0A0A9Q7B2_ARUDO; Uncharacterized protein
STRINGPavir.J10818.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1517079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-13FAR1-related sequence 5