PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG413300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 392aa    MW: 40765.4 Da    PI: 8.3134
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG413300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19305339135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pavir.1KG413300.1.p 305 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 339
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018299335IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18299353IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-14302362No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.72E-14304361No hitNo description
PfamPF003202.7E-17305339IPR000679Zinc finger, GATA-type
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASSFVAHHH GSLGVMEGRM TALRSSLRPC EAAEELDAAP AACGAAAERG AGLFGDGFSV  60
EDLLDLEDLC EVDKDCAELV DAPPAPAPAA VDDDKLSSDS HGSSVVSYEL MPLPPPPVID  120
LPLPGHDAEE LEWVSRIMDD SQAELPPQPK LPAATVAAAA AAVARRPLER AVPAAAGPTR  180
SPTICALSTE ALVPVKARRS KRSRASVWSL SGGALLSDST SSSSTATTSS CSSSASFAPF  240
LFLPADSPPA FFAARLLFEA PRGASKKPKH GKSGGKPKKR GRRPKHHPAP HQLAAAAAAP  300
GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSTIHSNSH  360
RKVLEMRRKK EGDLVPCPAP LPAAAPAVAS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34550.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG413300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.11e-173GATA transcription factor 6-like
TrEMBLA0A2T7F9Q41e-175A0A2T7F9Q4_9POAL; Uncharacterized protein
STRINGPavir.Ab02582.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-39GATA transcription factor 5