PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG414000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 668aa    MW: 70554.1 Da    PI: 6.1827
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG414000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.34.8e-2992176187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e+laLi++r+em+ ++r++ lk+plWe+v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++  ++++f qlea
  Pavir.1KG414000.1.p  92 RWPREETLALIRIRTEMDADFRSAPLKAPLWEDVARKLAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGR--SYRFFAQLEA 176
                          8*********************************************************************86555..5******985 PP
2trihelix105.63.4e-33414500187
             trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k+ev+aLi++r++++e+  + + +k+plWe+++++mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Pavir.1KG414000.1.p 414 RWPKEEVQALIQLRTDKDEQDHDaAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 500
                          8**************998887752679*******************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0189151IPR001005SANT/Myb domain
PfamPF138371.2E-1991177No hitNo description
CDDcd122031.87E-2792156No hitNo description
PROSITE profilePS500907.01592149IPR017877Myb-like domain
SMARTSM007172.4E-5411474IPR001005SANT/Myb domain
PROSITE profilePS500907.747413472IPR017877Myb-like domain
CDDcd122038.68E-28413479No hitNo description
SuperFamilySSF466892.48E-5414498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-5414471IPR009057Homeodomain-like
PfamPF138373.1E-23414501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLHHHGGAGS PYMAPTTTAG TDPFSPTPTG PAPVAAVIPP PPMELQAAAA AAGTTRGDLV  60
ELQAGGSSAA AAAGGLQDDD VPADAGAGAG HRWPREETLA LIRIRTEMDA DFRSAPLKAP  120
LWEDVARKLA GLGYRRSAKK CKEKFENVDK YYRRTKDARA GRQDGRSYRF FAQLEALHAA  180
AHQQRQATGM AAAVRGDHQP SAPVAWTAAP AAVAGPPAGA ALPDLSMSSM SGSDSDSESE  240
SESDDDLDAG VAGPGKGESG GGDGEMMAIF EGMMRQVTEK QDAMQRVFLG TLERWEAERT  300
AREEAWRRQE VARMNREREQ LARERAAAAS RDAALIAFLQ RVGGGPQQGE PVPLPPPIAA  360
AQPVPDRAPP SPRHDAAGQV TTSLQPVPAA APPKPEEARP WAGGEGSGGS TPSRWPKEEV  420
QALIQLRTDK DEQDHDAAGA KGPLWEDIAA AMRRIGYNRS AKRCKEKWEN INKYYKKVKE  480
SNKRRPEDSK TCPYFHQLDA MHRKKRFAGG GSSTAPGTFA AAGAGAGTMQ ESPNLRELEG  540
KSSNDDADRL RNGGQGNVNA PPCPGNGETA PTTTENKRAE DTVKGTNVQL LQRQFGANET  600
ESDDNDMGGD YTVERNDEDK MKCTTAFQKP NVIGSSGNNA PAPAPPATAA APTSSAAPAS  660
STFLAVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG414000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6QGT40.0A0A3L6QGT4_PANMI; Trihelix transcription factor GTL1-like isoform X1
STRINGPavir.Ab02437.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-41Trihelix family protein