PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG414100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 245aa    MW: 26579.5 Da    PI: 5.4048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG414100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-1853106456
                          -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Pavir.1KG414100.1.p  53 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                          458**************8899********************************9 PP
2HD-ZIP_I/II123.11.3e-3951144193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ ++L++e+ +L++
  Pavir.1KG414100.1.p  51 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQYDALHSRVDSLRQEKLALAA 140
                          69*****************9999******************************************************************9 PP

          HD-ZIP_I/II  90 elke 93 
                          +++e
  Pavir.1KG414100.1.p 141 QVDE 144
                          9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.02E-1738110IPR009057Homeodomain-like
PROSITE profilePS5007117.21647108IPR001356Homeobox domain
SMARTSM003894.7E-1750112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-1953115IPR009057Homeodomain-like
PfamPF000461.4E-1553106IPR001356Homeobox domain
CDDcd000863.17E-1656109No hitNo description
PRINTSPR000315.9E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000315.9E-788104IPR000047Helix-turn-helix motif
PfamPF021831.3E-16108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPRECQFVV VPPPRPRHGQ YEEGPFAHHQ MVVAGDPDPG GAGRGGGGGG ERKRRFTEEQ  60
VRSLETTFHA RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAALRAQ  120
YDALHSRVDS LRQEKLALAA QVDELKGRLS GRQDQPSGSS CEVSGGAEAA DDGRMNSASC  180
VAEDDGAVTP AVAASEESAA AAAAAAEYCC YDHAAYGGGL LPEPFCTTPE LWDTWPLLEW  240
NAVA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG414100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-131AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-131AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-131EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816119.11e-121homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U14e-82HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A3L6RVE91e-121A0A3L6RVE9_PANMI; Homeobox-leucine zipper protein HOX24-like
STRINGPavir.Ab02438.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-33homeobox 7