PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG420200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 172aa MW: 19917.8 Da PI: 10.0011

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG420200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	9.8e-22	17	99	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA vGFsvrks++k++k +++ ++ fvCs +g ++e ++ + trt C+a+++ + +k+++w v+k++ eHnH la Pavir.1KG420200.1.p 17 EMYNNYAGLVGFSVRKSRTKRRKSDDSLSQKYFVCSGQGLGKNEASQ-------KDITRTCCDARVQFSISKENVWTVQKIVVEHNHYLA 99 58************************************9998766.......99*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	17	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAPKVGMTFD CEKKAYEMYN NYAGLVGFSV RKSRTKRRKS DDSLSQKYFV CSGQGLGKNE 60 ASQKDITRTC CDARVQFSIS KENVWTVQKI VVEHNHYLAS PNKIHKLRSQ REIIEADRKL 120 IGQARQSGMK PSQVFNFMKE HYGGEDKVPF TKMDCYNEIG RERRQYLKWD L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG420200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020406333.1	1e-100	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1MNQ5	1e-74	T1MNQ5_TRIUA; Uncharacterized protein
STRING	Sb04g005390.1	5e-87	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-25	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG420200.1.p