PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG420800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 303aa    MW: 30986.2 Da    PI: 5.7534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG420800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-1786135255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pavir.1KG420800.1.p  86 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 135
                          59****999.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-3186144IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2086144IPR016177DNA-binding domain
PROSITE profilePS5103222.37986143IPR001471AP2/ERF domain
SMARTSM003801.8E-3686149IPR001471AP2/ERF domain
PfamPF008472.7E-1187135IPR001471AP2/ERF domain
CDDcd000185.46E-2887145No hitNo description
PRINTSPR003671.0E-98798IPR001471AP2/ERF domain
PRINTSPR003671.0E-9109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDADAIHAPT TSSTSSSGAG SCVINGAQEL PSANGRQHKH VKRKRAASPP AAPTGRRPPE  60
ATVDEEGSDG GGRRKRGSTA GTRHPTFRGV RMRVWGKWVS EIREPRKKSR IWLGTFATAE  120
MAARAHDVAA LAIKGRAAHL NFPHLAHELP RPASTAPADI QAAAAVAAAA AAAADVEQCV  180
SSQSHADETS AASSEKVAAC AAKAAAAATA GVEQCESSPA AEAASSSSAA SSVDAAAGHT  240
EESVLFDLPD LLLDLSDGLW SPIWAAAPAA AEEYDGDSLH EPLLWADDDQ CWMGAAAPVQ  300
PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1877144573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111096e-94stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG420800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278191e-106KJ727819.1 Zea mays clone pUT5771 AP2-EREBP transcription factor (EREB30) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812680.11e-114ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2T7F9Y01e-115A0A2T7F9Y0_9POAL; Uncharacterized protein
STRINGPavir.Ab02601.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-38ERF family protein