PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG421000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 264aa    MW: 27422.3 Da    PI: 4.6909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG421000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1878126355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Pavir.1KG421000.1.p  78 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 126
                          9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-1376126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3177135IPR001471AP2/ERF domain
PROSITE profilePS5103222.81377134IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2177134IPR016177DNA-binding domain
SMARTSM003809.5E-3677140IPR001471AP2/ERF domain
PRINTSPR003671.4E-107889IPR001471AP2/ERF domain
CDDcd000181.30E-2978135No hitNo description
PRINTSPR003671.4E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSLAETASRA RCSSVMEEEG ALSPASDACT TCSSSGGGSG PGSPVASSPS ASLDDSGAAS  60
AASSRKRRPR RELKHPAYRG VRMRAWGKWV SEIREPRKKS RIWLGTFDTP EMAARAHDVA  120
ALAIKGRAAH LNYPEMSHEL PRAASAAPED VRAAAALAAA MESAAPAAPS DSSHHGAAGS  180
DEDEEPAASA SPGHDDAGNA GDEEKAASLS EYAAVHPDGL VLDLALLELP DVLLEFGFEV  240
ALPPTTPCCY DLSWDEPLLL WEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17751341272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16471RKRRPRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.199314e-73stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG421000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701801e-124EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953341.11e-119dehydration-responsive element-binding protein 3
TrEMBLA0A368PPA71e-117A0A368PPA7_SETIT; Uncharacterized protein
STRINGPavir.Ab02603.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-36ERF family protein