PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG423200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 257aa    MW: 27148.4 Da    PI: 7.8888
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG423200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.6e-32111032103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y ++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g++
  Pavir.1KG423200.1.p  11 FVWKTYMMVEDPGTDGVIGWGRGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQT 91 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          + l++i r+ s+
  Pavir.1KG423200.1.p  92 HPLRNIVRRGSS 103
                          ********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.8E-497100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-328100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-368100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2711100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-171134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-174961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAAGGGAAAP FVWKTYMMVE DPGTDGVIGW GRGNNSFVVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THPLRNIVRR GSSAAGGGGG KRKDAGSAEP  120
SADDMAMVAT EVVRLKQEQR AIDDRVASMW RRVQETERRP KQMLAFLLKV VGDRDRLHRL  180
VGDAAAPDAP SGEAAAAAEG GEKRARLLLD GDGGIGSFGP DAVDFAGFYS GGGALGDVAV  240
DAPGGGSFAF GVDKGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-24310512125Heat shock factor protein 1
5d5u_B4e-24110014129Heat shock factor protein 1
5d5v_B4e-24110014129Heat shock factor protein 1
5d5v_D4e-24110014129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.46540.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG423200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597410.0EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-146heat stress transcription factor C-2b
SwissprotQ0DBL61e-118HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A368QVH61e-144A0A368QVH6_SETIT; Uncharacterized protein
STRINGGRMZM2G118047_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-57heat shock transcription factor C1