PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG429300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 532aa    MW: 56076.9 Da    PI: 5.5578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG429300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-056885219
                         EETTTTEEESSHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                         +C++Cgk F+++ +L  H
  Pavir.1KG429300.1.p 68 VCENCGKEFTSWKSLLDH 85
                         6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.396794IPR007087Zinc finger, C2H2
SMARTSM003551806787IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-7229252No hitNo description
PfamPF139124.2E-9230254IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221230257IPR007087Zinc finger, C2H2
SMARTSM003550.13230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7346373No hitNo description
PfamPF139127.3E-13350374IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995351373IPR007087Zinc finger, C2H2
SMARTSM003551.6351373IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MCGRALGGHM RAHGVVDDGL SADDALDDDA GPCGADDSPE VGSAAAAATA RRMYALRTNP  60
GRPKNCRVCE NCGKEFTSWK SLLDHGRCNY DEEEGDLDDD AANDGEEAGE DLALAAGWLK  120
GKRTRRAKVM VIRNGSITTS EEQLPAPSSE EEDLANFLVM LSSSASSAAP PHVVVEVGQE  180
PCASKSDKRN HQLLVPQPIS MVAPAVPQLK LLAPTQVLPH HVSTVPRGMF ECKACKKVFT  240
SHQALGGHRA SHKKVKGCFA AKLESNRVDP PQPIVVAAPA NDKVVGDAII PATVGNEQQN  300
TTGVDGNVEG STVNAETGVV VMATATPEMA ADEVPATMSA VAPFKKKGKV HECSICHRVF  360
MSGQALGGHK RCHWLTTGTG DPTGAVAKLQ PFVTQDHVMQ AMCRQLTLGR PMFDAPDPFL  420
DLNVPTNPSG ATRQAAELND SVLSLNTPAS LYMHSWAGHS NASNMNNTAT SGHDDAGEAM  480
ATEDEADSTS AKRAKISDLK DMKMAGETSP WLQVGIGLPS EINEEKQATQ A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG429300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822488.10.0uncharacterized protein LOC112898374
TrEMBLA0A3L6P9H70.0A0A3L6P9H7_PANMI; Uncharacterized protein
STRINGPavir.Ab02617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-18C2H2 family protein