PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG444600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 359aa MW: 35995.9 Da PI: 8.6601

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG444600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	65	126	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Pavir.1KG444600.2.p 65 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 126 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	61	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	67	123	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEEMLMAGNT NPNQHPNPPP ATPSAAPGAQ RPPGAPAAAA AAPGAGAAAG AGAGAGTERR 60 ARPQKEKALN CPRCNSTNTK FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK 120 NKRSSSAMSS AAAAAASTSA AVSGTIPVGF AAKNPKLMHE GAHDLNLAFP HHNGRGLQPP 180 EFAAFPSLES SSVCNPGATM AGNGGGAAGR GIGALSAMEL LRSTGCYVPL QHVQLGMPAE 240 YAAAGFALGD FRMPPPPQSQ SLLGFSLDTH GTGAGGYSAG LQEGAAGRLL FPFEDLKPAV 300 TAAGAANNNG ADQYEHSKDQ AGDGSGASGV TGGHETAGFW SNSILGNGSS NGGGGGPW*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEEMLMAGNT NPNQHPNPPP ATPSAAPGAQ RPPGAPAAAA AAPGAGAAAG AGAGAGTERR  60
ARPQKEKALN CPRCNSTNTK FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK  120
NKRSSSAMSS AAAAAASTSA AVSGTIPVGF AAKNPKLMHE GAHDLNLAFP HHNGRGLQPP  180
EFAAFPSLES SSVCNPGATM AGNGGGAAGR GIGALSAMEL LRSTGCYVPL QHVQLGMPAE  240
YAAAGFALGD FRMPPPPQSQ SLLGFSLDTH GTGAGGYSAG LQEGAAGRLL FPFEDLKPAV  300
TAAGAANNNG ADQYEHSKDQ AGDGSGASGV TGGHETAGFW SNSILGNGSS NGGGGGPW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4143	1e-146	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG444600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	0.0	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826521.1	1e-178	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-125	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A1E5VJZ3	1e-177	A0A1E5VJZ3_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	1e-166	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG444600.2.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]