PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG447600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 161aa    MW: 18140.9 Da    PI: 10.0129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG447600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-092411254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         RRdr+N++f eL +++ +    ++ Kl+Ka iL  A++ + +L
  Pavir.1KG447600.2.p  2 RRDRLNDRFLELSSVMNPG---KQAKLNKANILNDATRMLAQL 41
                         ******************9...9***************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.696141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-5246No hitNo description
SuperFamilySSF474592.36E-10262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRRDRLNDRF LELSSVMNPG KQAKLNKANI LNDATRMLAQ LRGEAEKLKE SNEKLRENIK  60
DLKEEKNELR EEKVRLKAEK ERLEQQVKAM SAAPTGYVPH LPHPAAYHPA AFAPFAPPQQ  120
DPTNKGAPIP AAFPGMAMWQ WLPPTMVDTT QDPKLWPPNA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139980.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG447600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409201e-164BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
GenBankEU9655851e-164EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314882.11e-104transcription factor ILR3-like isoform X1
RefseqXP_021314883.11e-104transcription factor ILR3-like isoform X2
SwissprotQ9FH378e-49ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A194YM801e-103A0A194YM80_SORBI; Uncharacterized protein
TrEMBLA0A194YN841e-103A0A194YN84_SORBI; Uncharacterized protein
STRINGPavir.Ab02693.1.p1e-113(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-35bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]