PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG462800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 475aa MW: 49192.8 Da PI: 6.1083

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG462800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	9.8e-31	224	282	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Pavir.1KG462800.1.p 224 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 282 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.684	218	284	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.7E-31	220	284	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	221	284	IPR003657	WRKY domain
SMART	SM00774	7.8E-38	223	283	IPR003657	WRKY domain
Pfam	PF03106	7.2E-26	225	282	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MCDYFLQRMD GDHRQAGDLT DVVRAGGAMQ AGVAELSSTG TPGWHQLPAP PEPAGAGLFP 60 PPHPPSSDGA GPSGDGFGDA FAGLSDAFGT GSDFRACSSG GAADFFDFEA PVGGRGGGGA 120 LVDSGGGGVV ALGMQMPALS PREIRPYPVM MAAGGDTVKL GLPTMMPGLA VGPPCAFDAV 180 GGMQMPSPHG IGIKRRKNQA RKVVCIPAPA ASAGGRTTGE VVPSDLWAWR KYGQKPIKGS 240 PYPRGYYRCS SSKGCPARKQ VERSRTDPSL LVITYNSEHN HPWPTQRNAL AGSTRSHHAK 300 NSKNNSSHDL QKPTVKAELD HQTPVVTSAA TAATSTTTTA TTSTTSNGTP TTTMAVKEES 360 MMGSEMEKGS ADHHDSSVAL DHGDLMQQMF SQSYRPMIPE GGHHVDDFFA DLAELESDPL 420 SLIFPGCDLG GREKAAPPNG LGADPLFNML DWGATNNVVA TSAGSSFEQG ESGL*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MCDYFLQRMD GDHRQAGDLT DVVRAGGAMQ AGVAELSSTG TPGWHQLPAP PEPAGAGLFP  60
PPHPPSSDGA GPSGDGFGDA FAGLSDAFGT GSDFRACSSG GAADFFDFEA PVGGRGGGGA  120
LVDSGGGGVV ALGMQMPALS PREIRPYPVM MAAGGDTVKL GLPTMMPGLA VGPPCAFDAV  180
GGMQMPSPHG IGIKRRKNQA RKVVCIPAPA ASAGGRTTGE VVPSDLWAWR KYGQKPIKGS  240
PYPRGYYRCS SSKGCPARKQ VERSRTDPSL LVITYNSEHN HPWPTQRNAL AGSTRSHHAK  300
NSKNNSSHDL QKPTVKAELD HQTPVVTSAA TAATSTTTTA TTSTTSNGTP TTTMAVKEES  360
MMGSEMEKGS ADHHDSSVAL DHGDLMQQMF SQSYRPMIPE GGHHVDDFFA DLAELESDPL  420
SLIFPGCDLG GREKAAPPNG LGADPLFNML DWGATNNVVA TSAGSSFEQG ESGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-23	197	285	2	80	Disease resistance protein RRS1
5w3x_D	1e-23	197	285	2	80	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG462800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061983	0.0	BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791328.1	0.0	probable WRKY transcription factor 14
Swissprot	Q9SA80	6e-69	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A2T7FAW8	0.0	A0A2T7FAW8_9POAL; Uncharacterized protein
STRING	Pavir.Ab02810.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-60	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Pavir.1KG462800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]