PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG488800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 229aa MW: 24449 Da PI: 10.4129

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG488800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105.3	4.1e-33	61	148	6	93
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 + lP+an++r+m++v+P+ k+s ak+++++c++ef++fv++eas+++++++r+ ++++d+ a tlG++dyvep+++y+++yre Pavir.1KG488800.1.p 61 AGLPMANLVRLMRQVIPKGVKVSAGAKHLTHDCAVEFVGFVAGEASEQAREQHRRIVSPEDFTRASQTLGLDDYVEPMSTYIRRYREH 148 569***********************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.0E-24	61	149	IPR009072	Histone-fold
Pfam	PF00808	5.4E-13	62	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.46E-19	63	149	IPR009072	Histone-fold
PRINTS	PR00615	3.8E-5	90	108	No hit	No description
PRINTS	PR00615	3.8E-5	128	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDKALRSPVI TKLHKIIERM GRKAKRGGAK QGVRDAGKAK VAPADRASPG GEGGSASAAA 60 AGLPMANLVR LMRQVIPKGV KVSAGAKHLT HDCAVEFVGF VAGEASEQAR EQHRRIVSPE 120 DFTRASQTLG LDDYVEPMST YIRRYREHHH IAAGYGGFVT RAPAVVTATA AAAPVTAPGV 180 PCFSDEEMQH PSSMVPPPNG EPRWRGEPRP WLHWIHVRVG SVACMAVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-22	63	147	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG488800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	0.0	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	1e-100	nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A2T8KXK0	2e-99	A0A2T8KXK0_9POAL; Uncharacterized protein
STRING	Pavir.Ab03026.1.p	1e-151	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	2e-23	nuclear factor Y, subunit B2

Link Out ? help Back to Top
Phytozome	Pavir.1KG488800.1.p