PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG498600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 236aa    MW: 27856.7 Da    PI: 10.7407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG498600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.52.8e-152396174
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dg 74
                         +f+ +Y+ ++GF+vrk++s+ s  +g++t+ +fvCs+eg r++ +++ + ++  raetrt+Cka++ + +++  g
  Pavir.1KG498600.1.p 23 QFWLAYGGRTGFDVRKRYSNVSPFDGKVTSCRFVCSNEGLRRKGQTN-RATKCFRAETRTDCKARISLILDRvAG 96
                         69*****************************************9999.99999*************987776544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-112393IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAELNKETPQ VGLRFKSADE AWQFWLAYGG RTGFDVRKRY SNVSPFDGKV TSCRFVCSNE  60
GLRRKGQTNR ATKCFRAETR TDCKARISLI LDRVAGNYER KISELQAFEI ETADESGIRP  120
KAAHELASRQ VGEPLNLSYT CRDRKNYLQS KRQRDLAFGQ AGRQRWRYRG RRRRRRRRRR  180
RSACMFGYED KVEFQEAFDI MRSKVHKQTW LDSIYKVKEK WVECFMRDVF SLGMD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175RGRRRRRR
2170180RRRRRRRRRRR
3172180RRRRRRRRR
4173180RRRRRRRR
5174180RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG498600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462668.11e-104protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A287W7H42e-73A0A287W7H4_HORVV; Uncharacterized protein
STRINGSb02g029930.11e-103(Sorghum bicolor)
STRINGSb02g042670.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-10FAR1-related sequence 12