PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG509500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 388aa    MW: 43573.4 Da    PI: 8.9284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG509500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.6e-53161431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d+
  Pavir.1KG509500.1.p  16 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDR 104
                          579***************************.89***************9888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Pavir.1KG509500.1.p 105 PIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                          ****966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5814175IPR003441NAC domain
PROSITE profilePS5100556.95616175IPR003441NAC domain
PfamPF023651.1E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDEIRSDDME KQDEVMLPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLTEPS LPSKKPLEKT IPPNDSWAIC RIFKKANSTA  180
QRALSHSWVS PPLSSTNENY IRPSSQTTQR SHHSSENTSS TMTDIVSSTI QFNGSNYMPS  240
ILSSSRNPLS IIGSSRPAAS LVLPPSGAEH QTMSVLSAIP LDLPAGMDIT SMVLNASPTT  300
LQNLDRIPTN IEFGQPHHPN NSIIMANRCT VDLPEIGNSA NSIPRSINFP FNLQGALPDD  360
WRMTLPWDSL PCTTEVSTNN QPTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531818219171NO APICAL MERISTEM PROTEIN
1ut4_B2e-531818219171NO APICAL MERISTEM PROTEIN
1ut7_A2e-531818219171NO APICAL MERISTEM PROTEIN
1ut7_B2e-531818219171NO APICAL MERISTEM PROTEIN
3swm_A3e-531818222174NAC domain-containing protein 19
3swm_B3e-531818222174NAC domain-containing protein 19
3swm_C3e-531818222174NAC domain-containing protein 19
3swm_D3e-531818222174NAC domain-containing protein 19
3swp_A3e-531818222174NAC domain-containing protein 19
3swp_B3e-531818222174NAC domain-containing protein 19
3swp_C3e-531818222174NAC domain-containing protein 19
3swp_D3e-531818222174NAC domain-containing protein 19
4dul_A2e-531818219171NAC domain-containing protein 19
4dul_B2e-531818219171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG509500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1964721e-177AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794833.10.0putative NAC domain-containing protein 94 isoform X1
SwissprotQ9ZVH01e-104FEZ_ARATH; Protein FEZ
TrEMBLA0A3L6RVT20.0A0A3L6RVT2_PANMI; Uncharacterized protein
STRINGPavir.Ab02998.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-106NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]