PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG512400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 447aa MW: 51893.3 Da PI: 8.1347

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG512400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.9	1.2e-11	108	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn Y+ e+GF +r k+++s ++++ ++++C ++g++++e k+ ++ rt+C akl++ ++ d+ w+v + Pavir.1KG512400.1.p 108 EYYNLYSWECGFGIRCGKKRYSmtreslklpQEKRYQLGQELNCCCSGRPSRELKT--------MSARTNCPAKLRLGRTADHGWVVVEH 189 69**************99998888887776677778889999999999988777........99******************** PP FAR1 82 eleHnHela 90 + HnHe++ Pavir.1KG512400.1.p 190 NPIHNHEMS 198 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-8	108	198	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-28	321	413	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MCRLAGCNMN HWDLNEQPAE SSSTMCGRVK GGGAAIVSVD AEVSSTNQQV VGWKTRNCVS 60 SGPDHREKEL GKTSALEQAL MKFADRNSEY IINPAVGTEF DDCEEAYEYY NLYSWECGFG 120 IRCGKKRYSM TRESLKLPQE KRYQLGQELN CCCSGRPSRE LKTMSARTNC PAKLRLGRTA 180 DHGWVVVEHN PIHNHEMSES YGENKLWPSH THLDKYTRSL VRMLRENNVP ITKLYSILGT 240 FFGKMENVPT TKRCLKNLCH KINREQAEND IKKTLYLFGE FMKDDPGFMY SIDQDEDGRI 300 KTMIWTNSKS RMQYEHFGDA ITFDTTYKTN MYEMPFGLFI GVNNHFQSVL LGGVLMTDEK 360 IETFRWIFKK FTRLMGGKEP VTILTDQCRA MEVAIAAEWK KTSHRWCKWH VLKRIVECLG 420 TRYTQNREFR DQFHKLLKEM LTIDEFE

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MCRLAGCNMN HWDLNEQPAE SSSTMCGRVK GGGAAIVSVD AEVSSTNQQV VGWKTRNCVS  60
SGPDHREKEL GKTSALEQAL MKFADRNSEY IINPAVGTEF DDCEEAYEYY NLYSWECGFG  120
IRCGKKRYSM TRESLKLPQE KRYQLGQELN CCCSGRPSRE LKTMSARTNC PAKLRLGRTA  180
DHGWVVVEHN PIHNHEMSES YGENKLWPSH THLDKYTRSL VRMLRENNVP ITKLYSILGT  240
FFGKMENVPT TKRCLKNLCH KINREQAEND IKKTLYLFGE FMKDDPGFMY SIDQDEDGRI  300
KTMIWTNSKS RMQYEHFGDA ITFDTTYKTN MYEMPFGLFI GVNNHFQSVL LGGVLMTDEK  360
IETFRWIFKK FTRLMGGKEP VTILTDQCRA MEVAIAAEWK KTSHRWCKWH VLKRIVECLG  420
TRYTQNREFR DQFHKLLKEM LTIDEFE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG512400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180988.1	1e-147	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024317136.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453G3W1	1e-155	A0A453G3W1_AEGTS; Uncharacterized protein
STRING	Pavir.J14899.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-45	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG512400.1.p