PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG534500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 416aa    MW: 43524.7 Da    PI: 5.1583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG534500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18332365134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Pavir.1KG534500.1.p 332 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 365
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-14325388No hitNo description
PROSITE profilePS5011411.279326362IPR000679Zinc finger, GATA-type
SMARTSM004018.2E-16326376IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14330363IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.04E-14331388No hitNo description
PfamPF003201.2E-15332365IPR000679Zinc finger, GATA-type
PROSITE patternPS003440332357IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MASAGFVEEM MREQSLLEAT CGDLFDHIED LLDFPKEESA ADVLLLDAPA PGSPLSARII  60
DVGGNAPAAP ALEPLMALPP PAAQEDAAAF FAAAGAPVFD AKDVGGHIGS CEDLDMDMAQ  120
LEWLSGLFDD ASIPHEPAFP GATCAAPIKS SALAANAGVA LLPPDKMEDA LFRSSSPISV  180
LEHNGFNANN NVGSASSSSS SASASSSSES FSGSGGGYAW SAPVSPRPEP PVLVIPARAR  240
SKRSRPSAFP RAAEAPTILV PTPMYSSTSS HSDPESIAES SPHQAFPKKK KKAKKPAPPA  300
PTASDANGDN DGDADYEEGG ERSQPQGAVR RCTHCQIEKT PQWRAGPLGP KTLCNACGVR  360
YKSGRLFPEY RPAASPTFVP TIHSNSHKKV VEMRQKAVRS GDPSCDLLQF IRRRD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG534500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.10.0GATA transcription factor 8-like
RefseqXP_025807694.10.0GATA transcription factor 8-like
TrEMBLA0A2T8KYD80.0A0A2T8KYD8_9POAL; Uncharacterized protein
STRINGPavir.Ab03246.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-37GATA family protein