PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG548600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 637aa    MW: 69392.5 Da    PI: 4.3535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG548600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.51.2e-48191551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratk 79 
                          l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat 
  Pavir.1KG548600.1.p  19 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRATP 107
                          579***************************.99***************5448999999***********99877777665577******* PP

                  NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +gyWk+tgkd+ev++ +g+ vg+kktLvf+ grapkg +++Wvmheyrl
  Pavir.1KG548600.1.p 108 RGYWKTTGKDREVYH-RGKPVGMKKTLVFHAGRAPKGDRSNWVMHEYRL 155
                          ***************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5515173IPR003441NAC domain
PROSITE profilePS5100555.19219173IPR003441NAC domain
PfamPF023651.2E-2621155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MSTSLSPPDS SPPPAEVPLA PGFRFHPTDE ELVSYYLRRR VLGRRLRVDA IAEVDLYRLE  60
PWDLPSLSRI RSRDAQWYFF ARLDRKVAGA GAGGRGGPGN RTNRATPRGY WKTTGKDREV  120
YHRGKPVGMK KTLVFHAGRA PKGDRSNWVM HEYRLLDADG PQDLHVVCRI FQKHGSGPQN  180
GAQYGAPYME EEWEEEDDAI ENAPASGTSA GMATTTCAAD EESNEEDENG YCKTNELAQA  240
HGMLSSPEMA PLKAQGSKDT SEGSCADGVI SLEEIMQEPL SAENIGRSEG QNATDDNFSV  300
DDLLSACPTK DNDYVGQDGT LNGSYPADGD CTHWPLRAYS NQNYANGTLS AEGFFDTQND  360
SNGNTYSEYQ QADGFPAPHQ VDGSMVFYDA PSDYNLVDGN DDFVYLNDLL NEPLGNESLF  420
DGDDMMAYFD ATENDFKYDI LGSAQGSNYQ LADMPLNFSQ KGDNKDKFTL DGISKSSEEN  480
TQYSASSSGS HKDLYPDTAI PDDTVDKTFG KRLASMLGSI PAPPAMASEP SATGKSVGAL  540
SAVSPSSIRV TAGIIQLDGL TFTGVSERWP LQKNGDFSLL LSFTVESDVP SKPVGFEQAT  600
RMSTIPMVLR SGMYLFFVSA MILLLSYKVG SCIYSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-431515511140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.97440.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG548600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3GUQ20.0A0A2S3GUQ2_9POAL; Uncharacterized protein
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-60NAC domain containing protein 53