PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG549600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 371aa    MW: 38206.1 Da    PI: 7.6165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG549600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001165187123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F++   L  H  +H
  Pavir.1KG549600.1.p 165 YECKTCSKCFPTFQALGGHRASH 187
                          99**********99999998887 PP
2zf-C2H211.60.00087264286123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F +   L  H+r+H
  Pavir.1KG549600.1.p 264 HECSICGAEFASGQALGGHMRRH 286
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-8164187No hitNo description
PfamPF139124.2E-11164189IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034165192IPR007087Zinc finger, C2H2
SMARTSM003550.2165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8259286No hitNo description
PfamPF139121.6E-12263287IPR007087Zinc finger, C2H2
SMARTSM003550.016264286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64264291IPR007087Zinc finger, C2H2
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MHTPAEAVEA PDTTEIAKPP LVVMPTSSTE HSAGELDRHQ QPPLTAAVKR KRTKRPRHHP  60
PASSASSSES TTTEEEDMAH CLILLAQGAA GGSSGAGAVA GSGSHAAVDS KPSPSPPSPA  120
AQQQAQPPPP AAAPPPPVKS ERYTSRKYTE AATTVDGVKA GFYVYECKTC SKCFPTFQAL  180
GGHRASHKKP RLAGTDDEIA INVVTASSTI IKQLKPPPMT TAPPPVSALQ QRPQNQMDVA  240
VFPDVTTALS LNSVAISSSK LRVHECSICG AEFASGQALG GHMRRHRPLN APERAVTAIA  300
GADTKKEGSA GINLELDLNL PAPSSDEEAA VSLPAAAAPP PAVVLGLGQL SDGKRAGLML  360
TASALVDCHY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG549600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039893e-34AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040263e-34AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149583e-34AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-34CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-180zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-179A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGPavir.Ab03370.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-40C2H2 family protein