PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG557700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 71aa MW: 8012.15 Da PI: 10.4626

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG557700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.5	2.4e-07	15	51	25	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +a+++eLe++v L +eN +Lk + ++lk e+a+l + Pavir.1KG557700.1.p 15 QAYVQELEKEVRRLVNENLKLKRQCKQLKMEMAALIQ 51 89*****************999999999999998855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-7	15	51	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGQAHYSNSD LVQGQAYVQE LEKEVRRLVN ENLKLKRQCK QLKMEMAALI QPSSSRSNPH 60 IRRASSSTQL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.10171	2e-90	callus\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG557700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956324	2e-53	EU956324.1 Zea mays clone 1560828 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812916.1	1e-27	bZIP transcription factor 27-like
Refseq	XP_025812921.1	1e-27	bZIP transcription factor 27-like
Refseq	XP_025812927.1	1e-27	bZIP transcription factor 27-like
TrEMBL	A0A3L6QIU2	1e-26	A0A3L6QIU2_PANMI; Protein FD-like
STRING	Pavir.Ab03353.1.p	5e-44	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4017	30	72

Link Out ? help Back to Top
Phytozome	Pavir.1KG557700.1.p