PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG557800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 138aa MW: 14463.2 Da PI: 5.9189

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG557800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.6	4.7e-07	97	117	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 ++ +r++kNRe+A rsR+RK+ Pavir.1KG557800.1.p 97 RKNIRMMKNRESALRSRARKR 117 6889****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-5	92	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MPRSPQLSLS GCSSLFSLSS TSTSRDNDSA AAEPVPPPPP SLHPLPPGRP LLSLSVGGGG 60 EEEQEDEEEY LLGGLDLQLT GAGGSNSSGC CDGDDERKNI RMMKNRESAL RSRARKRVGS 120 RILLKNSSSS LIPCLLK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.10171	0.0	callus\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG557800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812916.1	6e-26	bZIP transcription factor 27-like
Refseq	XP_025812921.1	6e-26	bZIP transcription factor 27-like
Refseq	XP_025812927.1	6e-26	bZIP transcription factor 27-like
TrEMBL	A0A3L6RQA7	9e-38	A0A3L6RQA7_PANMI; Protein FD-like
STRING	Pavir.J00689.1.p	1e-76	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4017	30	72

Link Out ? help Back to Top
Phytozome	Pavir.1KG557800.1.p