PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG015400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 433aa    MW: 48627.9 Da    PI: 5.5926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-19133179148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Pavir.1NG015400.1.p 133 KGQWTPEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 179
                          799*****************************.*************97 PP
2Myb_DNA-binding53.46.1e-17187227345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Pavir.1NG015400.1.p 187 IWSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 227
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.718128183IPR017930Myb domain
SuperFamilySSF466893.31E-32130226IPR009057Homeodomain-like
SMARTSM007171.7E-15132181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-30134186IPR009057Homeodomain-like
CDDcd001678.97E-16136179No hitNo description
PfamPF139211.6E-18136193No hitNo description
PROSITE profilePS5129419.938184234IPR017930Myb domain
SMARTSM007171.3E-16184232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21187232IPR009057Homeodomain-like
CDDcd001674.72E-14188230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDFSCFQPNA GICNYLPFDC MQQNGYYDFH PADHPFEATG DYISAGSMVP PATFDDLGHQ  60
YFEEREIKKP IFNHASSIGH RFGSQLPLLT PKTEVPHPVE SGLGSYKAYE MSDRFVPRKK  120
TSSNSLKKPN VVKGQWTPEE DRKLVKLVEQ FGLRKWSYIA QMLPGRVGKQ CRERWHNHLR  180
PNIKKDIWSE EEDMVLIQAH KEVGNKWAEI AKRLPGRTEN SIKNHWNATK RRQFARRRSR  240
TSSKGPKSGT LLQNYIKGLG IGPSKNVAPL AQPTLPPSSP ATPGSKSAKI DEMLEHSPSD  300
ILDSQGMLGV HEYNCSETDQ SCEELLAPIC SDDFSVVDMC EGLFDTKEDG SCFQVFTVDD  360
DVDMSYIFNH LDHAIKVDPE IDMEMMWDDA ALGCAEPAGA GSAQMETVHV KEEMDLMEMV  420
AATQKYAEAE KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-471312332104C-Myb DNA-Binding Domain
1msf_C6e-471312332104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A3L6TMH10.0A0A3L6TMH1_PANMI; Transcription factor MYB46-like
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-61myb domain protein 98